Skip to main content

Table 2 Complete and minimal network statistics for populations evolved in a XOR phenotype with and without HGT

From: Horizontal gene transfer dynamics and distribution of fitness effects during microbial in silico evolution

 

Full network

Minimal network

 

No HGT

HGT

No HGT

HGT

Fitness (St. Dev.)

0.81

(0.052)

0.79

(0.044)

0.78

(0.006)

0.75

(0.006)

Triplets

8.8

 

13.8

 

5.5

 

6.7

 

Links (St. Dev.)

335

(157)

338

(136)

10.6

(0.03)

14.1

(0.03)

Sparsity

0.39

 

0.22

 

0.11

 

0.10

 

Modularity

3.8

 

10.1

 

3.3

 

3.1

 
  1. Statistics were calculated over 128 simulation runs, and in populations that evolved an XOR phenotype (environment AB) with and without HGT (2000 epochs). Only fit cells (fitness > 0.7) were included, resulting on an average 74% representation. Sparsity is calculated as the ratio of the number of edges to the maximum number of possible edges in a directed graph.
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us