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Table 1 Comparison of BsFinder, SiteEngine, SuMo, and pdbFun on 55 proteins.

From: Computing the protein binding sites

 

BsFinder

SiteEngine

SuMo

pdbFun

 

number†

ratio(%)‡

number†

ratio(%)‡

number†

ratio(%)‡

number†

ratio(%)‡

1C52

5937/1583

27/73

4798/1212

25/56

1014/159

16/8

2621/627

24/29

8GSS

6111/3243

53/95

4702/1918

41/57

4698/1603

34/48

2704/951

35/28

256B

7834/3102

40/89

3982/1410

35/41

664/100

15/3

798/221

28/7

8ICK

8984/3758

42/97

8165/1848

23/48

9398/1526

16/40

2208/372

17/10

4VHB

7122/2299

32/78

3750/855

23/30

1500/167

11/6

1014/251

25/9

2BPV

6210/1309

21/85

4689/717

15/47

842/66

8/5

1230/151

12/10

2RTO

5540/2463

44/69

3612/1350

37/38

2542/871

34/24

1744/173

10/5

2TRM

4528/1268

28/53

6984/1107

16/46

10126/919

9/38

2348/331

14/14

2XAT

6041/2783

46/72

4506/1046

23/27

4721/856

18/22

1963/230

12/6

1JJU

5074/936

18/79

5685/616

11/53

9785/381

4/33

5328/429

8/37

4FX2

5603/2667

48/68

3318/1064

32/28

1878/583

31/15

1833/439

24/12

5P21

7179/3401

47/87

6017/1998

33/52

7556/1702

23/44

2097/659

31/17

2DUB

8681/2764

32/89

7226/1734

24/57

2641/473

18/16

2673/531

20/18

3MAN

7469/3536

47/91

8974/2102

23/55

9487/1627

17/43

2371/983

42/26

6DFR

7541/3621

48/93

8054/2479

31/64

3682/877

24/23

2318/670

29/18

1J6W

8543/2361

28/88

4812/1324

28/54

2762/314

12/13

1133/276

25/11

3PYP

5733/3347

58/87

3043/932

31/25

1841/529

29/14

1713/358

21/9

1E1V

8719/2148

24/85

6704/1064

16/48

8505/882

11/39

1943/195

10/9

1OIY

8452/2981

35/92

8104/1884

23/59

8441/1121

13/35

1844/280

15/9

3BU4

1407/874

62/84

3916/948

24/38

3945/599

15/24

1089/48

4/2

1T9G

7092/2526

36/84

8927/1714

19/58

9590/1073

11/36

2243/318

14/11

7CAT

6813/1564

23/87

7241/1483

21/83

14407/875

6/49

2375/376

16/21

1JX4

5294/497

9/94

5576/314

6/60

5637/198

4/38

1843/65

4/12

1CY6

5791/477

8/95

8485/326

4/66

11855/220

2/44

2793/85

3/17

1SK6

3267/457

14/82

9713/368

4/75

17100/345

2/70

2094/79

4/16

1H2S

8437/2263

27/95

3567/967

27/41

3079/497

16/21

2912/211

8/9

1DDT

8071/1921

24/89

7446/1324

18/65

11301/904

8/45

3428/162

5/8

1U19

8186/3523

43/92

9795/2057

21/54

11298/1629

14/43

2619/508

19/13

1PPJ

6638/377

6/94

9657/332

4/83

10634/146

2/37

3509/59

2/15

1NTM

6263/916

15/87

6640/421

6/43

13164/362

3/37

3357/48

2/5

7INS

6327/3155

50/82

5827/1750

30/46

682/38

6/1

169/47

28/2

1KI0

8011/3356

42/91

7502/2014

27/55

8999/1601

18/43

876/240

27/7

1PTR

5386/1696

31/67

5503/1349

25/54

1849/296

16/12

743/94

13/4

1GMN

7970/3474

44/88

7706/2014

26/53

5955/1053

18/27

733/261

36/7

1F4L

8445/1964

23/94

8683/1459

17/71

13102/1078

8/52

3199/435

14/21

1G9B

8738/2779

32/89

5786/1959

34/68

3542/382

11/13

4354/837

19/29

1JSH

3183/1365

43/45

4251/726

17/24

8483/1246

15/41

1735/537

31/18

1MG1

8162/1220

15/91

9897/952

10/74

11225/573

5/44

2559/191

7/15

1S1C

7999/3827

48/97

7460/2382

32/62

6037/1299

22/34

1898/532

28/14

1KWX

7995/2236

28/95

6022/1765

30/75

5255/452

9/19

1831/201

11/9

1IZL

8155/3676

45/96

7196/1637

23/43

2632/477

18/15

928/244

26/7

1DWL

6558/3201

49/83

3695/1269

35/33

246/45

18/1

317/100

32/3

1FFX

6770/902

13/87

7392/422

6/41

16061/469

3/45

2699/76

3/7

3LDH

6086/2762

45/75

6013/1890

32/52

11994/1464

12/40

1924/321

17/9

2YHX

8213/2737

33/91

8279/1642

20/54

9127/1186

13/39

2250/169

8/6

1GO9

5165/2661

52/67

3571/1210

34/31

30/1

3/1

359/135

38/4

1HTH

3321/1636

49/42

2147/896

42/23

55/7

13/1

58/20

34/1

1LXF

6121/1034

17/78

4831/731

15/55

2945/145

5/11

733/25

4/2

2PRG

6147/832

14/86

6298/718

12/74

6151/190

3/20

1873/71

4/8

1H2K

964/43

4/94

2779/26

2/58

8038/108

1/40

2017/18

1/40

1G8X

6989/3605

52/91

8935/2029

23/54

16085/2318

14/62

5733/797

14/21

1JY4

4207/2171

52/56

2678/756

28/20

129/35

27/1

105/49

5/1

1K09

3123/638

20/82

1201/291

24/38

123/4

3/1

97/16

16/2

1ABZ

2825/2432

86/63

1354/717

53/19

44/1

2/1

255/93

36/3

1L6X

8142/3627

45/96

7036/2059

29/55

5128/1005

20/27

858/355

41/10

  1. †The first number is the number of output sites reported by the program, the second number is the number of confirmed sites reported by the program;
  2. ‡The first number is the precision value (%) for the program, the second number is the recall value (%) for the program;