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Table 5 Comparison of the four programs on FAD-linked reductases family in FAD/NAD(P)-binding folds.

From: Computing the protein binding sites

 

BsFinder

SiteEngine

SuMo

pdbFun

 

number†

ratio(%)‡

number†

ratio(%)‡

number†

ratio(%)‡

number†

ratio(%)‡

1B4V

7835/4138

54/97

7017/1998

29/47

11797/1925

17/46

6894/2381

34/56

1B8S

7996/4101

52/96

7680/1940

26/46

11929/1865

16/44

9408/2843

31/68

1COY

7892/4135

53/96

8521/1996

24/47

11989/1864

16/43

9407/2857

31/67

1IJH

7859/4119

53/96

8497/2014

24/47

11427/1894

17/45

9424/2662

29/63

3COX

7878/4199

54/98

8014/2021

26/48

11647/1775

16/42

9245/2850

31/67

  1. †The first number is the number of output sites reported by the program, the second number is the number of confirmed sites reported by the program;
  2. ‡The first number is the precision value (%) for the program, the second number is the recall value (%) for the program;