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Figure 5 | BMC Bioinformatics

Figure 5

From: Efficient error correction for next-generation sequencing of viral amplicons

Figure 5

Homopolymer indels distribution according to size. (for the notation convenience we consider single nucleotides as homopolymers of length 1, so homopolymer indel in the homopolymer of length 1 is the insertion creating a homopolymer of length 2). Average homopolymer statistics over all 14 samples. The blue bars (left y-axis) show the number of homopolymer indels per read. The red line (left y-axis) shows the fraction of expected homopolymers of that size that contain errors. The green line (right y-axis) shows the percentage of homopolymers of that size that can be found in the real sequence.

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