Table 2 Algorithms ranked by quartile comparisons
From: A systematic comparison of genome-scale clustering algorithms
| Â | Average Quartile | Small (3-10 genes) | Medium (11-100 genes) | Large (101-1000 genes) | |||
|---|---|---|---|---|---|---|---|
Clustering Method | Â | Quartile | BAT5 Jaccard | Quartile | BAT5 Jaccard | Quartile | BAT5 Jaccard |
K-Clique Communities | 1.00 | 1 | 0.7531 | 1 | 0.4465 | 1 | 0.4915 |
Maximal Clique | 1.00 | 1 | 0.8433 | 1 | 0.4081 | Â | 0.0000 |
Paraclique | 1.00 | 1 | 0.7576 | 1 | 0.4285 | 1 | 0.4169 |
Ward (H) | 1.33 | 2 | 0.5782 | 1 | 0.4011 | 1 | 0.5723 |
CAST | 1.67 | 1 | 0.7455 | 3 | 0.3146 | 1 | 0.4994 |
QT Clust | 2.00 | 2 | 0.5473 | 2 | 0.3670 | 2 | 0.3944 |
Complete (H) | 2.33 | 3 | 0.3933 | 2 | 0.3677 | 2 | 0.3419 |
NNN | 2.67 | 2 | 0.5521 | 2 | 0.3705 | 4 | 0.2406 |
K-Means | 3.00 | 4 | 0.2573 | 3 | 0.3015 | 2 | 0.3463 |
SOM | 3.00 | 4 | 0.3260 | 2 | 0.3286 | 3 | 0.3282 |
WGCNA | 3.00 | 3 | 0.4391 | 3 | 0.3106 | 3 | 0.2949 |
Average (H) | 3.33 | 3 | 0.4087 | 4 | 0.2792 | 3 | 0.3037 |
McQuitty (H) | 3.33 | 3 | 0.4594 | 3 | 0.3065 | 4 | 0.2868 |
CLICK | 4.00 | 4 | 0.0339 | 4 | 0.1453 | 4 | 0.2817 |