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Table 1 Event types and their arguments for the GE task.

From: The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011

Event Type

Primary Argument

Secondary Argument

Gene_expression

Theme(Protein)

 

Transcription

Theme(Protein)

 

Protein_catabolism

Theme(Protein)

 

Phosphorylation

Theme(Protein)

Site(Entity)

Localization

Theme(Protein)

AtLoc(Entity), ToLoc(Entity)

Binding

Theme(Protein)+

Site(Entity)+

Regulation

Theme(Protein/Event), Cause(Protein/Event)

Site(Entity), CSite(Entity)

Positive_regulation

Theme(Protein/Event), Cause(Protein/Event)

Site(Entity), CSite(Entity)

Negative_regulation

Theme(Protein/Event), Cause(Protein/Event)

Site(Entity), CSite(Entity)

  1. The type of each filler entity is specified in parenthesis. Arguments that may be filled more than once per event are marked with "+".