Table 3 Detailed results on the test data using SEARN with domain adaptation
From: Biomedical event extraction from abstracts and full papers using search-based structured prediction
Domain | Â | abstracts+full | abstracts | full papers | |
|---|---|---|---|---|---|
Event Type/Class | Recall | Precision | F-score | F-score | F-score |
Gene _expression | 69.46 | 80.65 | 74.64 | 72.63 | 79.35 |
Transcription | 44.83 | 62.40 | 52.17 | 53.11 | 48.28 |
Protein _catabolism | 73.33 | 42.31 | 53.66 | 70.97 | 0.00 |
Phosphorylation | 81.62 | 88.82 | 85.07 | 83.08 | 90.53 |
Localization | 45.03 | 88.66 | 59.72 | 61.72 | 43.75 |
Simple (TOTAL) | 65.22 | 79.78 | 71.77 | 70.32 | 75.80 |
Binding | 38.09 | 57.36 | 45.78 | 46.67 | 43.72 |
Simple+Binding (TOTAL) | 58.75 | 75.23 | 65.98 | 65.27 | 67.87 |
Regulation | 32.99 | 41.50 | 36.76 | 38.13 | 32.77 |
Positive _regulation | 40.82 | 51.62 | 45.59 | 44.69 | 47.36 |
Negative _regulation | 38.35 | 43.89 | 40.93 | 43.80 | 35.64 |
Regulation (TOTAL) | 38.97 | 48.05 | 43.04 | 43.33 | 42.45 |
TOTAL | 48.10 | 60.34 | 53.53 | 53.79 | 52.93 |