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Table 2 Comparisons of clusters built by different methods to the reference SCOP fold classification (Total # of domains clustered:9528)

From: Self consistency grouping: a stringent clustering method

 

SCG

CL

AL

SL

Total number of clusters*

4965

4965

4965

4965

Number of non-singleton clusters

1926

1561

1263

975

Number of incorrect pairs

102

214

2952

6440

Percentage of incorrect pairs

(0.2)

(0.4)

(3.5)

(3.7)

Number of correct pairs

46938

50948

81280

166386

Percentage of correct pairs

(99.8)

(99.6)

(96.5)

(96.3)

  1. *Total number of clusters was fixed at the number of clusters determined by SCG for a fair comparison of different methods.