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Table 2 Two estimations of γ from three datasets

From: Accuracy of RNA-Seq and its dependence on sequencing depth

Data Set

Pairs of Experiments used in calculation

Standard Error1

MLE2

Caltech

6a

0.26

0.2

Chiang

3b

0.40

0.2

Bullard

12c

0.76

1.0

  1. 1 Obtained from slope in Figure 3
  2. 2 from maximizing likelihood Eq.(2)
  3. a from four libraries of same biological sample
  4. b from three knockout replicates and two wild type replicates
  5. c by comparing two different libraries having four and three replicates
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BMC Bioinformatics

ISSN: 1471-2105

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