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Table 1 Compared average performances grouped by cardinality of CMs.

From: Cancer module genes ranking using kernelized score functions

Precision at 0.2 recall

CM group

S kNN

GeneMANIA

Zhou

LabelProp

20 to 100

0.2040

0.1822

0.1872

0.0534

101 to 200

0.1851

0.1670

0.1607

0.0173

201 to 300

0.1792

0.1928

0.1991

0.0342

300 and more

0.2591

0.2620

0.2069

0.0359

average AUC

CM group

S kNN

GeneMANIA

Zhou

LabelProp

20 to 100

0.7990

0.7876

0.7779

0.7624

101 to 200

0.7149

0.7048

0.6773

0.6474

201 to 300

0.7267

0.7173

0.6804

0.6458

300 and more

0.7510

0.7525

0.6966

0.6213

  1. Compared average precision at 0.2 recall and average AUC across 298 CMs grouped by cardinality (number of genes included in the CMs) obtained by 5-folds cross-validation repeated 5 times.
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BMC Bioinformatics

ISSN: 1471-2105

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