Table 2 Imputation on RPO SNPs
From: Imputation reliability on DNA biallelic markers for drug metabolism studies
| Â | Â | Â | IGCT 50% | Â | Â | IGCT 70% | Â | Â | IGCT 90% | Â |
|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | discordance | No-call | N. of SSNPs | discordance | No-call | N. of SSNPs | discordance | No-call | N. of SSNPs |
MAF | #SNP | Â | Â | Â | Â | Â | Â | Â | Â | Â |
0 | 107 | 3,38% | 0,00% | 97 | 2,90% | 1,13% | 92 | 2,49% | 2,47% | 89 |
0-0.05 | 124 | 3,29% | 0,02% | 103 | 2,75% | 1,55% | 95 | 2,23% | 4,07% | 79 |
0.05-0.10 | 77 | 4,46% | 0,13% | 59 | 2,93% | 3,06% | 55 | 1,83% | 8,09% | 45 |
0.1-0.2 | 98 | 4,47% | 0,31% | 75 | 3,27% | 3,43% | 68 | 2,20% | 9,37% | 56 |
0.2-0.3 | 97 | 7,27% | 1,11% | 66 | 4,39% | 7,43% | 61 | 2,17% | 15,25% | 42 |
0.3-0.4 | 72 | 6,77% | 1,07% | 53 | 3,88% | 7,26% | 46 | 2,21% | 14,10% | 37 |
0.4-0.5 | 79 | 4,41% | 0,26% | 63 | 2,92% | 3,60% | 59 | 1,95% | 9,22% | 47 |