Skip to main content


Figure 3 | BMC Bioinformatics

Figure 3

From: GapFiller: a de novo assembly approach to fill the gap within paired reads

Figure 3

GapFiller data structure. The data structure used for GapFiller's implementation is composed of three arrays: HASHcounter, whose length depends on the parameter q used to compute the fingerprints; Reads and HASHvalues, whose lengths depend on the number of reads in . HASHvalues is divided in blocks, each of them corresponding to a fingerprint value; each HASHvalues' entry contains a pointer to an element of Reads and a boolean value indicating whether the read has been reverse-complemented or not.

Back to article page