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Table 6 GAGE comparison statistics on Staphylococcus aureus contigs

From: GapFiller: a de novo assembly approach to fill the gap within paired reads

Assembler #Ctg NG50 Chaff % Dupl % Comp % Indels ≤ 5 bp Indels > 5 bp Inv Rel
ABySS 301 29198 6.71 23.06 0.98 20 9 3 2
Allpaths-LG 59 96740 0.03 0.03 1.26 4 12 0 4
Bambus2 108 50192 0.00 0.01 1.27 56 164 2 11
MSR-CA 93 59152 0.02 0.71 0.88 23 10 6 7
GapFiller+PHRAP 90 42398 0.00 0.28 1.07 12 4 0 3
SGA 1253 4005 21.34 0.01 1.26 2 2 1 3
SOAPdenovo 106 288184 0.35 1.42 1.39 25 31 1 16
Velvet 161 48440 0.46 0.14 1.31 6 14 5 9