From: GapFiller: a de novo assembly approach to fill the gap within paired reads
Assembler | #Ctg | NG50 | Chaff % | Dupl % | Comp % | Indels ≤ 5 bp | Indels > 5 bp | Inv | Rel |
---|---|---|---|---|---|---|---|---|---|
ABySS | 301 | 29198 | 6.71 | 23.06 | 0.98 | 20 | 9 | 3 | 2 |
Allpaths-LG | 59 | 96740 | 0.03 | 0.03 | 1.26 | 4 | 12 | 0 | 4 |
Bambus2 | 108 | 50192 | 0.00 | 0.01 | 1.27 | 56 | 164 | 2 | 11 |
MSR-CA | 93 | 59152 | 0.02 | 0.71 | 0.88 | 23 | 10 | 6 | 7 |
GapFiller+PHRAP | 90 | 42398 | 0.00 | 0.28 | 1.07 | 12 | 4 | 0 | 3 |
SGA | 1253 | 4005 | 21.34 | 0.01 | 1.26 | 2 | 2 | 1 | 3 |
SOAPdenovo | 106 | 288184 | 0.35 | 1.42 | 1.39 | 25 | 31 | 1 | 16 |
Velvet | 161 | 48440 | 0.46 | 0.14 | 1.31 | 6 | 14 | 5 | 9 |