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Table 7 GAGE comparison statistics on Rhodobacter sphaeroides contigs

From: GapFiller: a de novo assembly approach to fill the gap within paired reads

Assembler #Ctg NG50 Chaff % Dupl % Comp % Indels ≤ 5 bp Indels > 5 bp Inv Rel
ABySS 1916 5872 1.67 10.07 0.49 278 34 2 17
Allpaths-LG 203 42455 0.01 0.38 0.33 150 37 0 6
Bambus2 176 93198 0.00 0.00 0.25 149 363 0 5
CABOG 321 20211 0.00 0.12 0.71 145 24 1 9
MSR-CA 394 22128 0.02 1.05 0.53 179 32 1 8
GapFiller+PHRAP 1584 7809 0.12 0.49 0.76 158 14 2 7
SGA 3073 2284 3.49 0.05 0.98 114 5 0 5
SOAPdenovo 204 131681 0.44 1.07 0.54 155 406 0 8
Velvet 583 15665 0.55 0.29 0.96 148 27 0 8