From: GapFiller: a de novo assembly approach to fill the gap within paired reads
Assembler | #Ctg | NG50 | Chaff % | Dupl % | Comp % | Indels ≤ 5 bp | Indels > 5 bp | Inv | Rel |
---|---|---|---|---|---|---|---|---|---|
ABySS | 1916 | 5872 | 1.67 | 10.07 | 0.49 | 278 | 34 | 2 | 17 |
Allpaths-LG | 203 | 42455 | 0.01 | 0.38 | 0.33 | 150 | 37 | 0 | 6 |
Bambus2 | 176 | 93198 | 0.00 | 0.00 | 0.25 | 149 | 363 | 0 | 5 |
CABOG | 321 | 20211 | 0.00 | 0.12 | 0.71 | 145 | 24 | 1 | 9 |
MSR-CA | 394 | 22128 | 0.02 | 1.05 | 0.53 | 179 | 32 | 1 | 8 |
GapFiller+PHRAP | 1584 | 7809 | 0.12 | 0.49 | 0.76 | 158 | 14 | 2 | 7 |
SGA | 3073 | 2284 | 3.49 | 0.05 | 0.98 | 114 | 5 | 0 | 5 |
SOAPdenovo | 204 | 131681 | 0.44 | 1.07 | 0.54 | 155 | 406 | 0 | 8 |
Velvet | 583 | 15665 | 0.55 | 0.29 | 0.96 | 148 | 27 | 0 | 8 |