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Table 2 Suggested corrections made to the existing annotation of M. haemolytica PHL213

From: Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213

Protein ID Gene start Gene end Gene length Protein length Strand Corrected start Corrected end Corrected gene length Corrected protein length Correction Type
MHA_0097 91433 92209 777 258 - 91433 92281 849 282 Mutated Start (L)
MHA_0304 314414 316213 1800 599 + 314210 316213 2004 667 Mutated Start (L)
MHA_0344 367264 368961 1698 565 + 367186 368961 1776 591 Mutated Start (L)
MHA_0410 430731 431060 330 109 + 430650 431060 411 136 Alternate Start
MHA_0591 615640 616941 1302 433 - 615640 617052 1413 470 Alternate Start
MHA_0736 750172 751350 1179 392 + 750121 751350 1230 409 Alternate Start
MHA_0819 821700 822038 339 112 + 821472 822038 567 188 Mutated Start (L)
MHA_1225 1209899 1211335 1437 478 + 1209791 1211335 1545 514 Alternate Start
MHA_1712 1697137 1698519 1383 460 + 1696987 1698519 1533 510 Alternate Start
MHA_2666 2591266 2592276 1011 336 - 2591266 2592360 1095 364 Alternate Start
MHA_2723 2659955 2660545 591 196 - 2659955 2660692 738 245 Alternate Start
  1. P reviously annotated gene locus, length and strand specificity. Observed locus based on RNA-Seq expression along with gene length (bp) and protein length (aa) and the description of the annotation error. In case of a mutated start, the amino acid start codon identified by RNA-Seq.