Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213

BMC Bioinformatics

Table 2 Suggested corrections made to the existing annotation of M. haemolytica PHL213

Protein ID	Gene start	Gene end	Gene length	Protein length	Strand	Corrected start	Corrected end	Corrected gene length	Corrected protein length	Correction Type
MHA_0097	91433	92209	777	258	-	91433	92281	849	282	Mutated Start (L)
MHA_0304	314414	316213	1800	599	+	314210	316213	2004	667	Mutated Start (L)
MHA_0344	367264	368961	1698	565	+	367186	368961	1776	591	Mutated Start (L)
MHA_0410	430731	431060	330	109	+	430650	431060	411	136	Alternate Start
MHA_0591	615640	616941	1302	433	-	615640	617052	1413	470	Alternate Start
MHA_0736	750172	751350	1179	392	+	750121	751350	1230	409	Alternate Start
MHA_0819	821700	822038	339	112	+	821472	822038	567	188	Mutated Start (L)
MHA_1225	1209899	1211335	1437	478	+	1209791	1211335	1545	514	Alternate Start
MHA_1712	1697137	1698519	1383	460	+	1696987	1698519	1533	510	Alternate Start
MHA_2666	2591266	2592276	1011	336	-	2591266	2592360	1095	364	Alternate Start
MHA_2723	2659955	2660545	591	196	-	2659955	2660692	738	245	Alternate Start

P reviously annotated gene locus, length and strand specificity. Observed locus based on RNA-Seq expression along with gene length (bp) and protein length (aa) and the description of the annotation error. In case of a mutated start, the amino acid start codon identified by RNA-Seq.

ISSN: 1471-2105