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Table 2 Example of the final output (fragment) table imported in Excel spreadsheet.

From: Computational workflow for analysis of gain and loss of genes in distantly related genomes

gene

am

ar

br

ca

da

ho

lo

mo

ne

sa

tr

ur

sum

Bilateria

Basal

Aqu1.205579

1

1

1

0

0

0

0

1

1

0

1

0

7

TRUE

TRUE

Aqu1.208671

1

0

1

1

0

0

0

0

1

1

0

1

7

TRUE

TRUE

Aqu1.213232

1

1

1

0

0

1

0

0

0

1

1

1

8

TRUE

TRUE

Aqu1.219112

1

0

1

0

0

0

0

0

0

0

0

1

4

TRUE

TRUE

Aqu1.201795

1

0

0

1

0

0

0

0

0

1

0

1

5

TRUE

TRUE

Aqu1.227071

1

0

0

1

0

0

0

0

0

1

0

1

5

TRUE

TRUE

  1. Rows represent selected genes (representative instances of gene families) from all Animal Metagenome pool, columns mark occurrence of the given gene from this pool in a particular genome. The last two columns have logical expressions for such gene occurrence in any Bilateria and in any Basal Metazoa genomes. Abbreviations: am -- Amphimedon; ar -- Arabidopsis; br -- Branchiostoma; ca -- Capsaspora; da -- Daphnia; ho -- Homo; lo -- Lottia; mo -- Monosiga; ne -- Nematostella; pb -- Pleurobrachia; tr -- Trichoplax; ur -- Sea urchin (Strongylocentrotus).