A Support Vector Machine based method to distinguish proteobacterial proteins from eukaryotic plant proteins

BMC Bioinformatics

Table 2 Total number of plant proteins taken from Uniprot and number of proteins remaining after redundancy filtering at 3 different percentages.

Negative dataset (Plant host)	Total number of proteins (reviewed)	90% redundancy	50% redundancy	30% redundancy
Triticum aestivum	357	315	292	291
Oryza sativa	87	86	86	86
Solanum tuberosum	390	314	308	308
Arabidopsis thaliana	1000	968	857	852
Cucurbita maxima	26	25	25	25
Citrus sinensis	93	91	91	91
Vitis vinefera	161	154	152	152
Hordeum vulgare	348	323	307	307
Pisum sativum	371	347	335	334
Glycine max	373	346	324	324
Total	3206	2969	2777	2770
Total after blastclust on cumulative data	-	2631	2284	2277

ISSN: 1471-2105