TY - JOUR AU - Yost, R. A. AU - Enke, C. G. PY - 1979 DA - 1979// TI - Triple quadrupole mass spectrometry for direct mixtxure analysis and structure elucidation JO - Analytical Chemistry VL - 51 UR - https://doi.org/10.1021/ac50048a002 DO - 10.1021/ac50048a002 ID - Yost1979 ER - TY - JOUR AU - Brumley, W. C. AU - Sphon, J. A. PY - 1981 DA - 1981// TI - Regulatory Mass Spectrometry JO - Biomed Mass Spectrom VL - 8 UR - https://doi.org/10.1002/bms.1200080908 DO - 10.1002/bms.1200080908 ID - Brumley1981 ER - TY - JOUR AU - Sphon, J. A. PY - 1978 DA - 1978// TI - Use of mass spectrometry for confirmation of animal drug residues JO - J Assoc Off Anal Chem VL - 61 ID - Sphon1978 ER - TY - JOUR AU - Vargo, J. D. PY - 1998 DA - 1998// TI - Determination of sulfonic acid degradates of chloroacetanilide and chloroacetamide herbicides in groundwater by LC/MS/MS JO - Analytical Chemistry VL - 70 UR - https://doi.org/10.1021/ac971365d DO - 10.1021/ac971365d ID - Vargo1998 ER - TY - CHAP AU - Draisci, R. AU - Palleschi, L. AU - Ferretti, E. AU - Lucentini, L. AU - Cammarata, P. PY - 2000 DA - 2000// TI - Quantitation of anabolic hormones and their metabolites in bovine serum and urine by liquid chromatography-tandem mass spectrometry BT - J Chromatography A ID - Draisci2000 ER - TY - JOUR AU - Kushnir, M. M. AU - Rockwood, A. L. AU - Nelson, G. J. AU - Yue, B. AU - Urry, F. M. PY - 2005 DA - 2005// TI - Assessing analytical specificity in quantitative analysis using tandem mass spectrometry JO - Clinical Biochemistry VL - 38 UR - https://doi.org/10.1016/j.clinbiochem.2004.12.003 DO - 10.1016/j.clinbiochem.2004.12.003 ID - Kushnir2005 ER - TY - JOUR AU - Kuhara, T. PY - 2007 DA - 2007// TI - Noninvasive human metabolome analysis for differential diagnosis of inborn errors of metabolism JO - J Chromatogr B Analyt Technol Biomed Life Sci VL - 855 UR - https://doi.org/10.1016/j.jchromb.2007.03.031 DO - 10.1016/j.jchromb.2007.03.031 ID - Kuhara2007 ER - TY - JOUR AU - Pitt, J. J. AU - Eggington, M. AU - Kahler, S. G. PY - 2002 DA - 2002// TI - Comprehensive screening of urine samples from inborn errors of metabolism by electrospray tandem mass spectrometry JO - Clinical Chemistry VL - 48 ID - Pitt2002 ER - TY - JOUR AU - Rifai, N. AU - Gillette, M. A. AU - Carr, S. A. PY - 2006 DA - 2006// TI - Protein biomarker discovery and validation: the long and uncertain path to clinical utility JO - Nature Biotechnology VL - 24 UR - https://doi.org/10.1038/nbt1235 DO - 10.1038/nbt1235 ID - Rifai2006 ER - TY - JOUR AU - Fenn, J. B. AU - Mann, M. AU - Meng, C. K. AU - Wong, S. F. AU - Whitehouse, C. M. PY - 1989 DA - 1989// TI - ) Electrospray ionization for mass spectrometry of large biomolecules JO - Science VL - 246 UR - https://doi.org/10.1126/science.2675315 DO - 10.1126/science.2675315 ID - Fenn1989 ER - TY - JOUR AU - Browne, T. R. PY - 1986 DA - 1986// TI - Stable isotopes in pharmacology studies: present and future JO - J Clin Pharmacol VL - 26 UR - https://doi.org/10.1002/j.1552-4604.1986.tb03563.x DO - 10.1002/j.1552-4604.1986.tb03563.x ID - Browne1986 ER - TY - JOUR AU - Moore, L. J. AU - Machlan, L. A. PY - 1972 DA - 1972// TI - High accuracy determination of calcium in blood serum by isotope dilution mass spectrometry JO - Anal Chem VL - 44 UR - https://doi.org/10.1021/ac60322a014 DO - 10.1021/ac60322a014 ID - Moore1972 ER - TY - JOUR AU - Cohen, A. AU - Hertz, H. S. AU - Mandel, J. AU - Paule, R. C. AU - Schaffer, R. AU - Sniegoski, L. T. AU - Sun, T. AU - Welch, M. J. AU - White, E. T. PY - 1980 DA - 1980// TI - Total serum cholesterol by isotope dilution/mass spectrometry: a candidate definitive method JO - Clin Chem VL - 26 ID - Cohen1980 ER - TY - JOUR AU - Lisek, C. A. AU - Bailey, J. E. AU - Benson, L. M. AU - Yaksh, T. L. AU - Jardine, I. PY - 1989 DA - 1989// TI - Quantitation of endogenouse substance P by on-line microcolumn liquid chromatography/continuous-flow fast atom bombardment mass spectrometry JO - Rapid Commun Mass Spectrom VL - 3 UR - https://doi.org/10.1002/rcm.1290030211 DO - 10.1002/rcm.1290030211 ID - Lisek1989 ER - TY - JOUR AU - Parsons, H. G. PY - 1990 DA - 1990// TI - Stable isotopes in the management and diagnosis of inborn errors of metabolism JO - Can J Physiol Pharmacol VL - 68 UR - https://doi.org/10.1139/y90-144 DO - 10.1139/y90-144 ID - Parsons1990 ER - TY - JOUR AU - Barr, J. R. AU - Maggio, V. L. AU - Stemman, O. AU - Jr, D. G. P. AU - Cooper, G. R. AU - Henderson, L. O. AU - Turner, W. E. AU - Smith, S. J. AU - Hannon, W. H. AU - Needham, L. L. AU - Sampson, E. J. PY - 1996 DA - 1996// TI - Isotope-dilution mass spectrometric quantification of specific proteins: model application with apolipoprotein A-1 JO - Clin Chem VL - 42 ID - Barr1996 ER - TY - JOUR AU - Gerber, S. A. AU - Rush, J. AU - Stemman, O. K. AU - Kirschner, M. W. AU - Gygi, S. P. PY - 2003 DA - 2003// TI - Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS JO - Proc Natl Acad Sci USA VL - 100 UR - https://doi.org/10.1073/pnas.0832254100 DO - 10.1073/pnas.0832254100 ID - Gerber2003 ER - TY - JOUR AU - Barnidge, D. R. AU - Dratz, E. A. AU - Martin, T. AU - Bonilla, L. E. AU - Moran, L. B. AU - Lindall, A. PY - 2003 DA - 2003// TI - Absolute quantification of the G protein-coupled receptor rhodopsin by LC/MS/MS using proteolysis product peptides and synthetic peptide standards JO - Anal Chem VL - 75 UR - https://doi.org/10.1021/ac026154+ DO - 10.1021/ac026154+ ID - Barnidge2003 ER - TY - JOUR AU - Kuhn, E. AU - Wu, J. AU - Karl, J. AU - Liao, H. AU - Zolg, W. AU - Guild, B. PY - 2004 DA - 2004// TI - Quantification of C-reactive protein in the serum of patients with rheumatoid arthritis using multiple reaction monitoring mass spectrometry and 13C-labeled peptide standards JO - Proteomics VL - 4 UR - https://doi.org/10.1002/pmic.200300670 DO - 10.1002/pmic.200300670 ID - Kuhn2004 ER - TY - JOUR AU - Abbatiello, S. E. AU - Mani, D. R. AU - Keshishian, H. AU - Carr, S. A. PY - 2010 DA - 2010// TI - Automated detection of inaccurate and imprecise transitions in peptide quantification by multiple reaction monitoring mass spectrometry JO - Clinical Chemistry VL - 56 UR - https://doi.org/10.1373/clinchem.2009.138420 DO - 10.1373/clinchem.2009.138420 ID - Abbatiello2010 ER - TY - JOUR AU - Keshishian, H. AU - Addona, T. A. AU - Burgess, M. AU - Kuhn, E. AU - Carr, S. A. PY - 2007 DA - 2007// TI - Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution JO - Mol Cell Proteomics VL - 6 UR - https://doi.org/10.1074/mcp.M700354-MCP200 DO - 10.1074/mcp.M700354-MCP200 ID - Keshishian2007 ER - TY - JOUR AU - Bondar, O. P. AU - Barnidge, D. R. AU - Klee, E. W. AU - Davis, B. J. AU - Klee, G. G. PY - 2007 DA - 2007// TI - LC-MS/MS quantification of Zn-alpha2 glycoprotein: a potential serum biomarker for prostate cancer JO - Clinical Chemistry VL - 53 UR - https://doi.org/10.1373/clinchem.2006.079681 DO - 10.1373/clinchem.2006.079681 ID - Bondar2007 ER - TY - JOUR AU - Hoofnagle, A. N. AU - Becker, J. O. AU - Wener, M. H. AU - Heinecke, J. W. PY - 2008 DA - 2008// TI - Quantification of thyroglobulin, a low-abundance serum protein, by immunoaffinity peptide enrichment and tandem mass spectrometry JO - Clinical chemistry VL - 54 UR - https://doi.org/10.1373/clinchem.2008.109652 DO - 10.1373/clinchem.2008.109652 ID - Hoofnagle2008 ER - TY - JOUR AU - Mani, D. R. AU - Addona, T. AU - Keshishian, H. AU - Burgess, M. AU - Shi, X. AU - Kuhn, E. AU - Sabatine, M. S. AU - Gerszten, R. E. AU - Carr, S. A. PY - 2009 DA - 2009// TI - Quantification of cardiovascular biomarkers in patient plasma by targeted mass spectrometry and stable isotope dilution JO - Molecular & cellular proteomics VL - 8 UR - https://doi.org/10.1074/mcp.M900140-MCP200 DO - 10.1074/mcp.M900140-MCP200 ID - Mani2009 ER - TY - JOUR AU - Abbatiello, S. E. AU - Pan, Y. X. AU - Zhou, M. AU - Wayne, A. S. AU - Veenstra, T. D. AU - Hunger, S. P. AU - Kilberg, M. S. AU - Eyler, J. R. AU - Richards, N. G. AU - Conrads, T. P. PY - 2008 DA - 2008// TI - Mass spectrometric quantification of asparagine synthetase in circulating leukemia cells from acute lymphoblastic leukemia patients JO - Journal of Proteomics VL - 71 UR - https://doi.org/10.1016/j.jprot.2007.11.009 DO - 10.1016/j.jprot.2007.11.009 ID - Abbatiello2008 ER - TY - CHAP AU - Kuhn, E. AU - Addona, T. AU - Keshishian, H. AU - Burgess, M. AU - Mani, D. R. AU - Lee, R. T. AU - Sabatine, M. S. AU - Gerszten, R. E. AU - Carr, S. A. PY - 2009 DA - 2009// BT - Developing multiplexed assays for troponin I and interleukin-33 in plasma by peptide ID - Kuhn2009 ER - TY - JOUR AU - Agger, S. A. AU - Marney, L. C. AU - Hoofnagle, A. N. PY - 2010 DA - 2010// TI - Simultaneous quantification of apolipoprotein A-1 and apolipoprotein B by liquid-chromatograph-multiple-reaction-monitoring mass spectrometry JO - Clin Chem VL - 56 UR - https://doi.org/10.1373/clinchem.2010.152264 DO - 10.1373/clinchem.2010.152264 ID - Agger2010 ER - TY - JOUR AU - Addona, T. A. AU - Abbatiello, S. E. AU - Schilling, B. AU - Skates, S. J. AU - Mani, D. R. AU - Bunk, D. M. AU - Spiegelman, C. H. AU - Zimmerman, L. J. AU - Ham, A. -. J. L. AU - Keshishian, H. AU - Hall, S. C. AU - Allen, S. AU - Blackman, R. K. AU - Borchers, C. H. AU - Buck, C. AU - Cardasis, H. L. AU - Cusak, M. P. AU - Dodder, N. G. AU - Gibson, B. W. AU - Held, J. M. AU - Hiltke, T. AU - Jackson, A. AU - Johansen, E. B. AU - Kinsinger, C. R. AU - Li, J. AU - Mesri, M. AU - Neubert, T. A. AU - Niles, R. K. AU - Pulsipher, T. C. AU - Ransohoff, D. AU - Rodriguez, H. AU - Rudnick, P. A. AU - Smith, D. AU - Tabb, D. L. AU - Tegeler, T. J. AU - Variyath, A. M. AU - Vega-Montoto, L. J. AU - Wahlander, A. AU - Waldemarson, S. AU - Wang, M. AU - Whiteaker, J. R. AU - Zhao, L. AU - Anderson, N. L. AU - Fisher, S. J. AU - Liebler, D. C. AU - Paulovich, A. G. AU - Regnier, F. E. AU - Tempst, P. AU - Carr, S. A. PY - 2009 DA - 2009// TI - Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma JO - Nature biotechnology VL - 27 UR - https://doi.org/10.1038/nbt.1546 DO - 10.1038/nbt.1546 ID - Addona2009 ER - TY - JOUR AU - Lavagnini, I. AU - Magno, F. PY - 2007 DA - 2007// TI - A statistical overview on univariate calibration, inverse regression, and detection limits: Application to gas chromatography/mass spectrometry technique JO - Mass spectrometry reviews VL - 26 UR - https://doi.org/10.1002/mas.20100 DO - 10.1002/mas.20100 ID - Lavagnini2007 ER - TY - CHAP AU - Rousseeuw, P. J. AU - Leroy, A. M. PY - 2003 DA - 2003// TI - Robust Regression and Outlier Detection BT - Wiley-Interscience ID - Rousseeuw2003 ER - TY - JOUR AU - Wilcox, R. R. AU - Keselman, H. J. PY - 2004 DA - 2004// TI - Robust Regression Methods: Achieving Small Standard Errors When There Is Heteroscedasticity JO - Understanding Statistics VL - 3 UR - https://doi.org/10.1207/s15328031us0304_8 DO - 10.1207/s15328031us0304_8 ID - Wilcox2004 ER - TY - CHAP AU - Venables, W. N. AU - Ripley, B. D. PY - 2002 DA - 2002// TI - Modern Applied Statistics with S BT - Springer ID - Venables2002 ER - TY - CHAP AU - Yohai, V. J. AU - Stahel, W. A. AU - Zamar, R. H. ED - Stahel, W. A. ED - Weisberg, S. W. PY - 1991 DA - 1991// TI - A procedure for robust estimation and inference in linear regression BT - Directions in Robust Statistics and Diagnosis, Part II ID - Yohai1991 ER - TY - JOUR AU - Schoeller, D. A. PY - 1976 DA - 1976// TI - A review of the statistical considerations involved in the treatment of isotope dilution calibration data JO - Biological Mass Spectrometry VL - 3 UR - https://doi.org/10.1002/bms.1200030603 DO - 10.1002/bms.1200030603 ID - Schoeller1976 ER - TY - CHAP AU - Skoog, D. A. AU - Holler, F. G. AU - Niemann, L. H. PY - 1998 DA - 1998// TI - Princlples of Instrumental Analysis BT - Saunders College Publishing ID - Skoog1998 ER - TY - JOUR AU - Mandel, J. AU - Stiehler, R. D. PY - 1964 DA - 1964// JO - J Res Natl Bur Std VL - 53 UR - https://doi.org/10.6028/jres.053.018 DO - 10.6028/jres.053.018 ID - Mandel1964 ER - TY - JOUR AU - Yergey, A. L. PY - 1998 DA - 1998// TI - The presentation of calibration curves and quantitative data JO - Biomed Environ Mass Spectrom VL - 15 UR - https://doi.org/10.1002/bms.1200150810 DO - 10.1002/bms.1200150810 ID - Yergey1998 ER - TY - CHAP AU - Feinstein, A. R. PY - 2001 DA - 2001// TI - Principles of Medical Statistics BT - Journal of the Royal Statistical Society Series B (Methodological) ID - Feinstein2001 ER - TY - JOUR AU - Currie, L. A. PY - 1968 DA - 1968// TI - Limits for qualitative detection and quantitative determination. Application to radiochemistry JO - Analytical Chemistry VL - 40 UR - https://doi.org/10.1021/ac60259a007 DO - 10.1021/ac60259a007 ID - Currie1968 ER - TY - JOUR AU - Linnet, K. AU - Kondratovich, M. PY - 2004 DA - 2004// TI - Partly nonparametric approach for determining the limit of detection JO - Clinical chemistry VL - 50 UR - https://doi.org/10.1373/clinchem.2003.029983 DO - 10.1373/clinchem.2003.029983 ID - Linnet2004 ER - TY - JOUR AU - Anderson, D. J. PY - 1989 DA - 1989// TI - DetermInatIon of the Lower Limit of Detection JO - Clinical chemistry VL - 35 ID - Anderson1989 ER - TY - JOUR AU - Vial, J. AU - Mapiphan, K. L. AU - Jardy, A. PY - 2003 DA - 2003// TI - What is the Best Means of Estimating the Detection and Quantification Limits of a Chromatographic Method? JO - Chromatographia VL - 57 UR - https://doi.org/10.1007/BF02492120 DO - 10.1007/BF02492120 ID - Vial2003 ER - TY - JOUR AU - Anderson, N. L. AU - Anderson, N. G. PY - 2002 DA - 2002// TI - The human plasma proteome: history, character, and diagnostic prospects JO - Mol Cell Proteomics VL - 1 UR - https://doi.org/10.1074/mcp.R200007-MCP200 DO - 10.1074/mcp.R200007-MCP200 ID - Anderson2002 ER - TY - JOUR AU - Li, W. AU - Cohen, L. H. PY - 2003 DA - 2003// TI - Quantitation of endogenous analytes in biofluid without a true blank matrix JO - Anal Chem VL - 75 UR - https://doi.org/10.1021/ac034505u DO - 10.1021/ac034505u ID - Li2003 ER - TY - CHAP AU - Davison, A. C. AU - Hinkley, D. C. PY - 1997 DA - 1997// TI - CBootstrap Methods and Their Application BT - Cambridge Series in Statistical and Probabilistic Mathematics ID - Davison1997 ER - TY - JOUR AU - Yan, Z. AU - Maher, N. AU - Torres, R. AU - Cotto, C. AU - Hastings, B. AU - Dasgupta, M. AU - Hyman, R. AU - Huebert, N. AU - Caldwell, G. W. PY - 2008 DA - 2008// TI - Isobaric metabolite interferences and the requirement for close examination of raw data in addition to stringent chromatographic separations in liquid chromatography/tandem mass spectrometric analysis of drug in biological matrix JO - Rapid Commun Mass Spectrom VL - 22 UR - https://doi.org/10.1002/rcm.3577 DO - 10.1002/rcm.3577 ID - Yan2008 ER - TY - JOUR AU - Whiteaker, J. R. AU - Zhao, L. AU - Zhang, H. Y. AU - Feng, L. C. AU - Piening, B. D. AU - Anderson, L. AU - Paulovich, A. G. PY - 2007 DA - 2007// TI - Antibody-based enrichment of peptides on magnetic beads for mass-spectrometry-based quantification of serum biomarkers JO - Anal Biochem VL - 362 UR - https://doi.org/10.1016/j.ab.2006.12.023 DO - 10.1016/j.ab.2006.12.023 ID - Whiteaker2007 ER - TY - JOUR AU - Benjamini, Y. AU - Hochberg, Y. PY - 1995 DA - 1995// TI - Controlling the false discovery rate: a practical and powerful approach to multiple testing JO - Journal of the Royal Statistical Society Series B (Methodological) VL - 57 ID - Benjamini1995 ER - TY - JOUR AU - Kost, J. T. AU - McDermott, M. P. PY - 2002 DA - 2002// TI - Combining dependent P-values JO - Statistics & Probability Letters VL - 60 UR - https://doi.org/10.1016/S0167-7152(02)00310-3 DO - 10.1016/S0167-7152(02)00310-3 ID - Kost2002 ER - TY - JOUR AU - Brown, M. B. PY - 1975 DA - 1975// TI - A Method for Combining Non-Independent, One-Sided Tests of Significance JO - Biometrics VL - 31 UR - https://doi.org/10.2307/2529826 DO - 10.2307/2529826 ID - Brown1975 ER - TY - JOUR AU - Sing, T. AU - Sander, O. AU - Beerenwinkel, N. AU - Lengauer, T. PY - 2005 DA - 2005// TI - ROCR: visualizing classifier performance in R JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti623 DO - 10.1093/bioinformatics/bti623 ID - Sing2005 ER - TY - STD TI - Reiter L, Rinner O, Picotti P, Hüttenhain R, Beck M, Brusniak MY, Hengartner MO, Aebersold R: mProphet: automated data processing and statistical validation for large-scale SRM experiments. Nature methods . 2011, 8 (5): ID - ref52 ER - TY - JOUR AU - MacLean, B. AU - Tomazela, D. M. AU - Shulman, N. AU - Chambers, M. AU - Finney, G. L. AU - Frewen, B. AU - Kern, R. AU - Tabb, D. L. AU - Liebler, D. C. AU - MacCoss, M. J. PY - 2010 DA - 2010// TI - Skyline: an open source document editor for creating and analyzing targeted proteomics experiments JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq054 DO - 10.1093/bioinformatics/btq054 ID - MacLean2010 ER - TY - BOOK AU - Tufte, E. R. PY - 2001 DA - 2001// TI - The Visual Display of Quantitative Information ID - Tufte2001 ER - TY - JOUR AU - Hoofnagle, A. N. PY - 2010 DA - 2010// TI - Quantitative clinical proteomics by liquid chromatography-tandem mass spectrometry: assessing the platform JO - Clinical Chemistry VL - 56 UR - https://doi.org/10.1373/clinchem.2009.134049 DO - 10.1373/clinchem.2009.134049 ID - Hoofnagle2010 ER - TY - JOUR AU - Xia, J. Q. AU - Sedransk, N. AU - Feng, X. PY - 2011 DA - 2011// TI - Variance Component Analysis of a Multi-Site Study for the Reproducibility of Multiple Reaction Monitoring Measurements of Peptides in Human Plasma JO - PLoS ONE VL - 6 UR - https://doi.org/10.1371/journal.pone.0014590 DO - 10.1371/journal.pone.0014590 ID - Xia2011 ER - TY - JOUR AU - Briscoe, C. J. AU - Hage, D. S. AU - Stiles, M. R. PY - 2007 DA - 2007// TI - System Suitability in Bioanalytical LC/MS/MS JO - Journal of Pharmaceutical and Biomedical Analysis VL - 44 UR - https://doi.org/10.1016/j.jpba.2007.03.003 DO - 10.1016/j.jpba.2007.03.003 ID - Briscoe2007 ER -