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Table 2 Experimental setting

From: CFMDS: CUDA-based fast multidimensional scaling for genome-scale data

Dataset Size of Dissimilarity Matrix No. of Submatrices
(p)
No. of Samples
in Each Submatrix (s)
IRIS 150 × 150 3 20
Dermatology 366 × 366 3 60
M. musculus Microarray 2,000 × 2,000 10 100
S. cerevisiae Microarray 9,300 × 9,300 10 150
MNIST 10,000 × 10,000 10 150
  1. These parameters were set for comparison experiments of the divide-and-conquer mode of CFMDS. In fact, the CFMS application automatically detects the available memory size and these parameters are subsequently determined. For IRIS, Dermatology, and M. muculus Microarray datasets, these parameters were set arbitrarily, because they can be processed by the one-shot mode of CFMDS.