Skip to main content

Table 2 Experimental setting

From: CFMDS: CUDA-based fast multidimensional scaling for genome-scale data

Dataset

Size of Dissimilarity Matrix

No. of Submatrices

(p)

No. of Samples

in Each Submatrix (s)

IRIS

150 × 150

3

20

Dermatology

366 × 366

3

60

M. musculus Microarray

2,000 × 2,000

10

100

S. cerevisiae Microarray

9,300 × 9,300

10

150

MNIST

10,000 × 10,000

10

150

  1. These parameters were set for comparison experiments of the divide-and-conquer mode of CFMDS. In fact, the CFMS application automatically detects the available memory size and these parameters are subsequently determined. For IRIS, Dermatology, and M. muculus Microarray datasets, these parameters were set arbitrarily, because they can be processed by the one-shot mode of CFMDS.