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Table 1 Comparison between Compareads and BLAST.

From: Compareads: comparing huge metagenomic experiments

 

Total Time (min)

Mean Time for one intersection (s)

Reads Found

BLAST

7200

3600

33 400 091

Compareads 1 ∗ 33

238

119

35 898 023

Compareads 4 ∗ 33

230

115

31 997 243

Compareads 10 ∗ 33

228

114

21 350 268

  1. CPU time per intersection and global CPU time using a single core of an Intel® Xeon® CPU X5550 at 2.67GHz. Reads Found corresponds to the total number of similar reads in all the 120 intersections.
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BMC Bioinformatics

ISSN: 1471-2105

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