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Table 2 The human chromosome 14 assembly results in terms of continuity, accuracy, and statistics.

From: TIGER: tiled iterative genome assembler

Evaluations Continuity Accuracy Statistics
  Contig # NG50 (kbp) NG50 corr. (kbp) SNP Indels Misjoins Asm. (%) Unaligned ref. (%) Duplicated ref. (%)
Velvet 61k 28,974 5.2 4.7 82,235 17,755 601 96.69 2.09 0.43
Tiger-Velvet-R 125i 20,189 11.6 9.3 84,577 21,847 533 97.90 1.98 1.50
Tiger-Velvet-I 7i 21,623 10.9 8.9 84,811 21,470 654 98.43 1.53 1.48
SOAPdenovo 55k 50,094 3.0 3.0 67,956 11,866 36 95.91 3.13 0.28
Tiger-Soap-R 120i 60,134 3.6 3.4 68,881 12,839 185 99.40 3.01 2.79
Tiger-Soap-I 7i 55,173 3.8 3.6 69,215 13,390 205 98.68 2.43 1.46
  1. The columns include the number of contigs, NG50 size and its error-corrected size, the number of single nucleotide polymorphisms (SNPs), the number of indels and misjoins in contigs, total assembly length, genome coverage (100 - Unaligned ref.), and duplications. K-mer 61 and 55 are the best k-mer sizes for Velvet and SOAPdenovo, respectively. "#k" stands for the applied k-mer size. "#i" stands for the iteration number.