Table 5 Comparison of the runtime and memory usage on the human chromosome 14 assembly.
Evaluations | Wall-clock time (Hr.) | Speedup against 1 thread | Peak memory usage (GB) | Thread # in total | Machine # | K-mer size # | Tile # |
|---|---|---|---|---|---|---|---|
Velvet 61k | 0.95 | 1x | 8.26 | 1 | 1 | 1 | 1 |
Velvet 61k | 0.47 | 2.02x | 8.40 | 4 | 1 | 1 | 1 |
SOAPdenovo 55k | 0.43 | 1x | 8.31 | 1 | 1 | 1 | 1 |
SOAPdenovo 55k | 0.25 | 1.72x | 8.50 | 4 | 1 | 1 | 1 |
Tiger-Velvet-I 1i | 4.69 | 1x | 1.87 | 1 | 1 | 1 | 150 |
Tiger-Velvet-I 1i | 1.58 | 2.98x | 2.44 | 4 | 1 | 1 | 150 |
Tiger-Velvet-I 1i | 0.83 | 5.69x | N/A+ | 12 | 3 | 1 | 150 |
Tiger-Velvet-I 1i | 0.66 | 7.16x | N/A+ | 20 | 5 | 1 | 150 |