Table 1 Comparing our method with HPeak (bin size 25 bp).
From: A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data
FDR | Peak/Threshold Ratio | # of Regions | Ratio of Overlap with HPeak (%) |
|---|---|---|---|
0.05 | 5 | 108393 | 100 |
0.05 | 10 | 35243 | 100 |
0.03 | 9 | 24213 | 100 |
0.03 | 10 | 20421 | 93.09 |
0.02 | 8 | 21699 | 98.11 |
0.02 | 10 | 15612 | 80.90 |
0.01 | 6 | 22859 | 100 |
0.01 | 6.5 | 20358 | 96.65 |
0.01 | 8 | 15302 | 80.01 |