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Table 4 Properties of two putative ncRNAs on chromosome 1 of J2315

From: Genome-scale NCRNA homology search using a Hamming distance-based filtration strategy

ID

PLAST

FA

Start

End

identity

p-value

5' gene

3' gene

5'

3'

 

score

score

      

D

D

1

0.39

2591

3278580

3278849

0.52

0.022

BCAL2989

BCAL2990

50

53

2

0.38

2538

548365

548654

0.42

0

BCAL0496

BCAL0497

55

267

  1. All of them are conserved in R. solanacearum.
  2. "PLAST" refers to PLAST-ncRNA. "FA" stands for FOLDALIGN. 5' D and 3' D contain the distances to the 5' and 3' neighbor protein-coding genes, respectively.
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BMC Bioinformatics

ISSN: 1471-2105

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