Skip to main content

Table 5 Analysis of proteins belonging to the Urea Transporter (UT) family

From: Ab initio detection of fuzzy amino acid tandem repeats in protein sequences

Protein

Tandem repeats found by

ID

Acc #

Length

PTRStalker

HHRep

HHRepID

TRUST

RADAR

dvUT

ABM28909

337aa

[14-165]

[11-91]

[2-138 ]

[11-139]

5-x-44

   

[177-323]

[174-254]

[141-286]

[140-303]

[23-269]

apUT

YP_001969475

300aa

[17-136]

[2-140]

[2-138]

[21-128]

[45-129]

   

[153-284]

[156-288]

[156-286]

[175-278]

[199-277]

mUT-A1

AAM00357

930aa

[4-452]

[63-337]

[65-493]

[41-421]

5-x-52

   

[467-918]

[532-800]

[533-916]

[422-866]

[117-775]

hsUT-A1

AAL08485

920aa

[4-320]

[50-338]

[87-490]

[102-564]

6-x-24

   

[403-763]

[519-800]

[548-906]

[565-916]

[189-721]

  1. dvUT = [D. vulgaris DP4], apUT =[A. pleuropneumoniae AP76], mUT-A1 = [Mus musculus], and hsUT-A1 = [Homo sapiens]. For each protein (row) and for each algorithm that returned at least a result (column) we report the longest fuzzy repeated subsequence detected by each algorithm by giving start and end position of homologous segments. Note that XSTREAM and T-REKS are not listed here because they are unsuitable for detecting long fuzzy dimeric structures.
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us