From: Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee
SP | MSAProbs | Kalign | PROMALS | MAFFT | ProbCons | PRALINE™ | PSI-Coffee |
---|---|---|---|---|---|---|---|
MSAProbs | NA | 0.014 | 0.547 | 0.483 | 0.675 | 0.779 | 0.726 |
Kalign | 0.014 | NA | 0.195 | 0.039 | 0.008 | 0.195 | 0.078 |
PROMALS | 0.547 | 0.195 | NA | 0.575 | 0.742 | 0.742 | 0.528 |
MAFFT | 0.483 | 0.039 | 0.575 | NA | 0.889 | 0.844 | 0.779 |
ProbCons | 0.675 | 0.008 | 0.742 | 0.889 | NA | 0.461 | 0.262 |
PRALINE™ | 0.779 | 0.195 | 0.742 | 0.844 | 0.461 | NA | 0.641 |
PSI-Coffee | 0.726 | 0.078 | 0.528 | 0.779 | 0.262 | 0.641 | NA |
TC | MSAProbs | Kalign | PROMALS | MAFFT | ProbCons | PRALINE™ | PSI-Coffee |
MSAProbs | NA | 0.035 | 0.150 | 0.529 | 1.000 | 0.779 | 0.204 |
Kalign | 0.035 | NA | 0.742 | 0.078 | 0.055 | 0.272 | 0.014 |
PROMALS | 0.150 | 0.742 | NA | 0.529 | 0.362 | 0.624 | 0.233 |
MAFFT | 0.529 | 0.078 | 0.529 | NA | 0.362 | 0.945 | 0.262 |
ProbCons | 1.000 | 0.055 | 0.362 | 0.362 | NA | 1.000 | 0.353 |
PRALINE™ | 0.779 | 0.272 | 0.624 | 0.945 | 1.000 | NA | 0.195 |
PSI-Coffee | 0.204 | 0.014 | 0.233 | 0.262 | 0.353 | 0.195 | NA |