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Table 5 Comparison of running time

From: Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee

 

MSAProbs

Kalign

PROMALS

MAFFT

ProbCons

T-Coffee

TM-Coffee

       

extension

alignment

7TM

759.42

0.94

19,587.13

14.03

711.32

1,164.66

488.04

2,684.41

Nat

244.02

0.60

13,285.11

43.51

269.07

243.42

175.40

395.88

ACR

548.96

1.13

19,102.74

41.73

620.30

418.28

174.24

1,130.15

DTD

343.45

0.71

12,555.83

70.90

396.70

335.35

187.64

949.92

ION

413.04

1.06

10,034.86

75.68

498.60

364.19

203.80

931.70

MSL

0.75

0.01

646.19

0.12

0.72

0.84

16.72

9.17

PHOTO

16.73

0.06

2,388.75

1.66

15.40

18.05

55.89

25.85

PTGA

202.76

0.48

9,745.36

21.75

217.93

190.35

181.00

567.69

SUM

2,529.13

4.99

87,345.97

269.37

2,730.04

2,735.14

1,482.73

6,694.77

  1. The PRALINE™ is run through its web server (standalone version not available), so the comparison does not include PRALINE™. MSAProbs is measured by using single threaded for comparison with TM-Coffee in single core. The unit is second.