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Table 1 Benchmark results

From: Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities

  SENSITIVITY SPECIFICITY PPV MCC
TRAINING SET 0.269 0.984 0.461 0.312
HOLO TEST SET 0.295 0.983 0.413 0.313
APO TEST SET 0.251 0.984 0.372 0.271
  1. Results obtained by PDBinder on the Training Set and Apo/Holo Test Sets. These results were derived by using a single propensity threshold for all the amino acids and applying the spatial clustering with a 10 Angstrom threshold.