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Table 3 Predicted binding residues for the GDPRAN-NTF2 complex

From: Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities

  CHAIN RESIDUE RESIDUE NUM BIND NON-BIND PDBINDER PROPENSITY VALUE
PDBinder predictions D G 19 311 627 0.332
  D G 20 409 487 0.456
  D T 21 200 491 0.289
  D G 22 868 754 0.535
  D K 23 1112 267 0.806
  D T 24 476 557 0.461
  D T 25 418 535 0.439
  D N 122 405 244 0.624
  D K 123 381 156 0.709
  D D 125 145 163 0.471
  D S 150 227 433 0.344
  D A 151 343 809 0.298
  D K 152 31 175 0.150
Q-SiteFinder predictions A Q 65 1 109 0.009
  A S 67 57 532 0.097
  A Q 88 14 221 0.060
  A L 89 24 1168 0.020
  A I 96 9 313 0.028
  A G 98 82 741 0.100
  A A 122 16 538 0.029
  A H 124 3 26 0.103
  B M 97 8 207 0.037
  B G 98 96 741 0.115
  B A 122 19 568 0.032
  B H 124 3 22 0.120
  B F 126 0 10 0.000
  D V 40 33 1820 0.018
  D A 41 44 1033 0.041
  D T 42 36 426 0.078
  1. Binding site residues predicted by Q-SiteFinder and PDBinder on GDPRAN-NTF2 complex (PDB: 1a2k). The only false positive residue identified by PDBinder is S150.