Tandem repeats discovery service (TReaDS) applied to finding novel cis-acting factors in repeat expansion diseases

Table 5 Table of fuzzy tandem repeats for PolQ TR.

Gene code	Seq length	Cover	TR-beg	TR-end	FTR-beg	FTR-end	FTR/TR	Cover/Length
ATN1	4367	206	1687	1743	1646	1751	1.875	0.047
HTT	13481	196	197	265	196	367	2.514	0.014
HS-AR	4314	377	1286	1354	1224	1391	2.455	0.087
ATXN1	10636	4237	1560	1646	1500	1718	2.534	0.398
ATXN2	4712	401	658	726	629	748	1.75	0.085
CACNA1A	8641	579	7186	7224	7160	7425	6.973	0.067
ATXN7	7242	443	641	670	576	743	5.758	0.061
TBP	1921	305	451	564	389	636	2.185	0.158
ATXN3	10000(*)	-	943	984	-	-	-	-

Table of fuzzy tandem repeats for PolQ TR. The table reports: gene code, sequence length, length of the region covered by FTRs, TR expansion begin and TR expansion end, FTR begin and FTR end, ratio of FTR length over TR length, ratio of region covered by FTRs over total sequence length. (*) indicates that a subsequence has been analyzed.

ISSN: 1471-2105