Tandem repeats discovery service (TReaDS) applied to finding novel cis-acting factors in repeat expansion diseases

Table 6 Table of covering fuzzy tandem repeats for polyalanine TR.

Gene code	Seq length	Cover	TR-beg	TR-end	FTR-beg	FTR-end	FTR/TR	Cover/Length
FOXL2	9900	5000	6079	6115	6082	6258	4.888	0.505
ZIC2	11701	677	8385	8429	8304	8534	5.227	0.057
PHOX2B	11889	187	7940	7993	7830	8015	3.490	0.015
ARX	19255	1039	7252	7299	7199	7424	4.787	0.053
SOX3	9074	1114	5700	5744	5584	6191	13.795	0.122
RUNX2	10000 (*)	766	99435	99485	99310	99488	3.560	0.076
HOXA13	10227	658	5375	5428	5328	5493	3.113	0.064
HOXD13	10135	279	5256	5300	5025	5304	6.340	0.027
PABPN1	12976	1337	6286	6303	6278	6405	7.470	0.103

Table of covering fuzzy tandem repeats for polyalanine TR. The table reports: gene code, sequence length, length of the region covered by FTRs, TR expansion begin and TR expansion end, FTR begin and FTR end, ratio of FTR length over TR length, ratio of region covered by FTRs over total sequence length. (*) indicates that a subsequence has been analyzed.

ISSN: 1471-2105