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Table 7 Table of covering fuzzy tandem repeats for non-polyglutammine and non-polyalanine TR.

From: Tandem repeats discovery service (TReaDS) applied to finding novel cis-acting factors in repeat expansion diseases

Gene code Seq length Cover TR-beg TR-end FTR-beg FTR-end FTR/TR Cover/Length
FMR1 46137 3415 5061 5171 4983 5168 1.681 0.074
AFF2 16800 595 5021 5062 4958 5429 11.487 0.035
FXN 2465 723 2185 2212 2036 2414 14.000 0.293
DMPK 2465 273 2304 2363 2213 2365 2.576 0.110
ZNF9 23153 5462 16312 16387 16264 17088 10.986 0.235
ATXN10(**) 50000(*) 1301 128559 128628 28543 28654 1.608 0.026
PPP2R2B 5120 703 2088 2366 1842 2363 1.874 0.137
CSTB 9429 3098 4899 4935 4472 5019 15.194 0.328
JPH3 10000(*) 807 35581 35746 35476 35755 1.690 0.080
ATXN8OS 39541 - 37142 37216 - - - -
  1. Table of covering fuzzy tandem repeats for non-polyglutammine and non-polyalanine TR. The table reports: gene code, sequence length, length of the region covered by FTRs, TR expansion begin and TR expansion end, FTR begin and FTR end, ratio of FTR length over TR length, ratio of region covered by FTRs over total sequence length. (*) indicates that a subsequence has been analyzed. (**) indicates two overlapping FTRs.