Tandem repeats discovery service (TReaDS) applied to finding novel cis-acting factors in repeat expansion diseases

Table 7 Table of covering fuzzy tandem repeats for non-polyglutammine and non-polyalanine TR.

Gene code	Seq length	Cover	TR-beg	TR-end	FTR-beg	FTR-end	FTR/TR	Cover/Length
FMR1	46137	3415	5061	5171	4983	5168	1.681	0.074
AFF2	16800	595	5021	5062	4958	5429	11.487	0.035
FXN	2465	723	2185	2212	2036	2414	14.000	0.293
DMPK	2465	273	2304	2363	2213	2365	2.576	0.110
ZNF9	23153	5462	16312	16387	16264	17088	10.986	0.235
ATXN10(**)	50000(*)	1301	128559	128628	28543	28654	1.608	0.026
PPP2R2B	5120	703	2088	2366	1842	2363	1.874	0.137
CSTB	9429	3098	4899	4935	4472	5019	15.194	0.328
JPH3	10000(*)	807	35581	35746	35476	35755	1.690	0.080
ATXN8OS	39541	-	37142	37216	-	-	-	-

Table of covering fuzzy tandem repeats for non-polyglutammine and non-polyalanine TR. The table reports: gene code, sequence length, length of the region covered by FTRs, TR expansion begin and TR expansion end, FTR begin and FTR end, ratio of FTR length over TR length, ratio of region covered by FTRs over total sequence length. (*) indicates that a subsequence has been analyzed. (**) indicates two overlapping FTRs.

ISSN: 1471-2105