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Table 2 Correspondence between classes and original datasets

From: Towards linked open gene mutations data

Class

Description

Linked to

IARC datasets

database

Database information

somatic_mutation

Implicit

gene

Gene information

gene_variation

Implicit

gene_variation

Detailed description of the mutation

gene, somatic_mutation

Gene variations

somatic_mutation

Summary mutation data, linked to bibliography, sample, and variation data

database, sample, gene_variation, somatic_ref

Somatic mutations

sample

Tumor topography, morphology, origin, and classification

somatic_mutation, individual

Somatic mutations

individual

Demographic details, life-style data and genetics of the donor

sample

Somatic mutations

somatic_ref

Bibliographic references where mutations are described

somatic_mutation

Somatic references

  1. A summary of published classes and the correspondence with the original datasets.