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Table 3 Comparisons of TRIPLE and RNAfold by the percentages of sequences falling in each category of a Z-score range.

From: Stable stem enabled Shannon entropies distinguish non-coding RNAs from random backgrounds

Dataset

Method

≥2 (%)

≥1.5 (%)

≥1(%)

≥0.5 (%)

Hh1

TRIPLE

26.67

40.00

53.33

73.33

 

RNAfold

0.00

0.00

20.00

53.33

sno_guide

TRIPLE

14.43

24.45

38.39

58.19

 

RNAfold

1.71

7.82

23.96

43.03

sn_splice

TRIPLE

40.51

50.63

60.76

65.82

 

RNAfold

6.33

21.52

54.43

69.62

SRP

TRIPLE

35.06

44.16

59.74

67.53

 

RNAfold

5.19

24.68

58.44

71.43

tRNA

TRIPLE

29.56

51.33

70.97

86.02

 

RNAfold

0.18

4.25

24.78

47.96

intron

TRIPLE

60.75

69.16

78.50

85.98

 

RNAfold

2.80

17.76

60.75

84.11

riboswitch

TRIPLE

34.64

48.37

60.13

78.43

 

RNAfold

0.65

17.65

47.06

70.59

miRNA

TRIPLE

81.48

88.89

94.07

97.04

 

RNAfold

0.00

7.41

65.93

97.78

telomerase

TRIPLE

29.41

35.29

41.18

58.82

 

RNAfold

0.00

23.53

41.18

58.82

RNase

TRIPLE

50.70

70.42

81.69

92.25

 

RNAfold

1.41

12.68

34.51

59.15

regulatory

TRIPLE

22.41

24.14

32.76

56.90

 

RNAfold

0.00

6.90

27.59

63.79

tmRNA

TRIPLE

18.64

32.20

45.76

55.93

 

RNAfold

1.69

10.17

33.90

50.85

rRNA

TRIPLE

36.16

50.62

70.87

83.06

 

RNAfold

1.45

15.70

35.33

56.82

  1. Random sequences were obtained with di-nucleotide shuffling of the real ncRNA sequences.