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Table 3 Comparisons of TRIPLE and RNAfold by the percentages of sequences falling in each category of a Z-score range.

From: Stable stem enabled Shannon entropies distinguish non-coding RNAs from random backgrounds

Dataset Method ≥2 (%) ≥1.5 (%) ≥1(%) ≥0.5 (%)
Hh1 TRIPLE 26.67 40.00 53.33 73.33
  RNAfold 0.00 0.00 20.00 53.33
sno_guide TRIPLE 14.43 24.45 38.39 58.19
  RNAfold 1.71 7.82 23.96 43.03
sn_splice TRIPLE 40.51 50.63 60.76 65.82
  RNAfold 6.33 21.52 54.43 69.62
SRP TRIPLE 35.06 44.16 59.74 67.53
  RNAfold 5.19 24.68 58.44 71.43
tRNA TRIPLE 29.56 51.33 70.97 86.02
  RNAfold 0.18 4.25 24.78 47.96
intron TRIPLE 60.75 69.16 78.50 85.98
  RNAfold 2.80 17.76 60.75 84.11
riboswitch TRIPLE 34.64 48.37 60.13 78.43
  RNAfold 0.65 17.65 47.06 70.59
miRNA TRIPLE 81.48 88.89 94.07 97.04
  RNAfold 0.00 7.41 65.93 97.78
telomerase TRIPLE 29.41 35.29 41.18 58.82
  RNAfold 0.00 23.53 41.18 58.82
RNase TRIPLE 50.70 70.42 81.69 92.25
  RNAfold 1.41 12.68 34.51 59.15
regulatory TRIPLE 22.41 24.14 32.76 56.90
  RNAfold 0.00 6.90 27.59 63.79
tmRNA TRIPLE 18.64 32.20 45.76 55.93
  RNAfold 1.69 10.17 33.90 50.85
rRNA TRIPLE 36.16 50.62 70.87 83.06
  RNAfold 1.45 15.70 35.33 56.82
  1. Random sequences were obtained with di-nucleotide shuffling of the real ncRNA sequences.