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Table 4 Comparisons of TRIPLE and RNAfold by the percentages of sequences falling in each category of a Z-score range.

From: Stable stem enabled Shannon entropies distinguish non-coding RNAs from random backgrounds

Dataset Method ≥2 (%) ≥1.5 (%) ≥1 (%) ≥0.5 (%)
Hh1 TRIPLE 6.67 33.33 53.33 73.33
  RNAfold 0.00 0.00 20.00 53.33
sno_guide TRIPLE 14.91 25.43 41.10 57.95
  RNAfold 1.47 7.33 24.21 44.01
sn_splice TRIPLE 31.65 43.04 56.96 65.82
  RNAfold 6.33 24.05 53.16 68.35
SRP TRIPLE 32.47 45.45 55.84 68.83
  RNAfold 5.19 29.87 59.74 77.92
tRNA TRIPLE 24.07 45.31 64.25 79.47
  RNAfold 0.00 6.19 26.19 48.85
intron TRIPLE 59.81 68.22 74.77 84.11
  RNAfold 1.87 16.82 58.88 85.98
riboswitch TRIPLE 32.03 44.44 56.86 71.90
  RNAfold 1.31 20.92 49.67 71.24
miRNA TRIPLE 75.56 81.48 90.37 93.33
  RNAfold 0.74 10.37 69.63 97.78
telomerase TRIPLE 23.53 29.41 41.18 58.82
  RNAfold 5.88 17.65 35.29 58.82
RNase TRIPLE 38.03 56.34 72.54 87.32
  RNAfold 1.41 15.49 35.92 61.27
regulatory TRIPLE 18.97 25.86 31.03 51.72
  RNAfold 0.00 5.17 32.76 67.24
tmRNA TRIPLE 15.25 27.12 38.98 57.63
  RNAfold 0.00 11.86 35.59 45.76
rRNA TRIPLE 34.09 47.31 64.88 79.96
  RNAfold 1.86 17.98 37.60 57.64
  1. Random sequences were obtained with single nucleotide shuffling of the real ncRNA sequences.