Table 3 Comparison of NestedAlign similarity scores for the GENE OFF structure of the XPT guanine riboswitch
From: Maximum expected accuracy structural neighbors of an RNA secondary structure
Index | EMBL | RNAbor | RNAborMEA | RNAbor-Sample | RNAlocopt | RNAshapes | UNAFold |
|---|---|---|---|---|---|---|---|
0 | AL591981/205922-205823 | 27.5 | 28.5 | 28.5 | 25.5 | 25.5 | 25.5 |
1 | CP000764/271074-271175 | 13.0 | 12.5 | 11.0 | 6.5 | 12.0 | 5.5 |
2 | CP000764/308099-308200 | 24.0 | 26.0 | 26.5 | 23.0 | 24.5 | 26.5 |
3 | BA000028/760473-760574 | 18.5 | 22.0 | 13.0 | 20.5 | 23.5 | 23.0 |
4 | CP000557/252200-252301 | 7.0 | 8.0 | 7.0 | 10.0 | 6.5 | 4.5 |
5 | X83878/168-267 | 143.0 | 143.5 | 143.0 | 141.0 | 143.0 | 141.0 |
6 | BA000004/1593074-1592973 | 41.0 | 39.0 | 41.0 | 36.0 | 38.0 | 41.0 |
7 | AAOX01000023/19446-19345 | 47.5 | 45.5 | 46.0 | 42.5 | 34.0 | 43.5 |
8 | CP000416/1798040-1798138 | 17.5 | 12.5 | 12.5 | 13.0 | 11.5 | 12.5 |
9 | CP000721/398929-399026 | 36.5 | 20.5 | 23.0 | -38.5 | 34.5 | -52.5 |
10 | BA000028/1103943-1104044 | 32.0 | 29.5 | 32.0 | 27.5 | 30.5 | 30.0 |
11 | ABDQ01000002/251055-251152 | 27.0 | 26.0 | 26.5 | 24.0 | 25.5 | 7.5 |
12 | AAXV01000026/31334-31233 | 37.5 | 38.5 | 38.0 | 32.5 | 35.0 | 36.0 |
13 | AE016877/298774-298875 | 24.0 | 25.5 | 23.0 | 19.0 | 23.0 | 22.5 |
14 | BA000004/676475-676576 | 9.0 | 4.5 | 6.5 | -35.5 | 5.0 | 9.0 |
15 | AE017333/692981-693082 | -30.0 | -9.5 | -23.5 | -25.5 | -17.0 | -70.5 |
16 | AM180355/256217-256318 | -23.5 | -24.0 | -25.0 | -27.0 | -23.5 | -27.0 |
17 | AM406671/1321062-1320965 | -0.5 | 3.5 | 1.0 | -10.0 | 1.0 | 0.5 |
18 | CP000612/2598111-2598012 | -12.0 | -9.0 | -8.0 | -8.5 | -9.5 | -9.0 |
19 | CP000002/697032-697134 | 16.5 | 7.0 | 12.0 | 14.0 | 16.5 | 7.5 |
20 | CP000002/2295936-2295837 | 75.0 | 73.0 | 75.5 | 71.0 | 72.0 | 69.5 |
21 | AL596170/223345-223246 | 30.5 | 31.5 | 30.5 | 28.5 | 29.5 | 29.5 |
22 | ABDQ01000005/131908-131807 | 12.5 | 3.0 | 13.0 | 10.5 | 13.5 | 4.5 |
23 | AAOX01000052/9069-8968 | 12.5 | 14.5 | 13.5 | 11.0 | 12.0 | 12.0 |
24 | AE017333/4024324-4024425 | -3.5 | 2.5 | 3.5 | 6.0 | -2.5 | -1.5 |
25 | AP006627/1554717-1554818 | 22.5 | 18.0 | 22.5 | 14.5 | 25.5 | 12.5 |
26 | CP000024/1182948-1183043 | 6.0 | 7.0 | 6.5 | 6.0 | 5.0 | 6.0 |
27 | BA000028/786767-786867 | -23.5 | -19.5 | -23.0 | -24.5 | -21.0 | -24.0 |
28 | ABDP01000002/29688-29587 | 3.0 | 1.0 | 2.5 | 1.0 | 4.5 | 0.5 |
29 | BA000043/272473-272574 | 17.5 | 12.5 | 12.5 | 13.5 | 12.5 | 11.5 |
30 | CP000724/944285-944386 | 10.0 | 11.0 | 10.5 | 7.0 | 12.0 | 9.5 |
31 | CP000764/1409725-1409826 | 32.5 | 36.0 | 32.0 | 26.5 | 35.0 | 30.5 |
32 | AAEK01000017/86437-86538 | 11.5 | 11.5 | 13.0 | 8.0 | 13.0 | 11.0 |
33 | CP000764/357645-357544 | 23.5 | 22.0 | 24.5 | 24.0 | 22.0 | 22.5 |