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Table 2 Assembly performance comparison on the rice genome

From: Exploiting sparseness in de novo genome assembly

( k= 31 ) ABySS Velvet SOAPdenovo SparseAssembler
Time (hr) 13 7 16 5
Memory peak (GB) 69 51 29 4
> 100 bp (# contigs) 458,456 397,252 444,545 386,604
   Sum (kbp) 253,708 225,618 258,106 262,988
Mean size (bp) 553 568 581 680
N50 (bp) 538 310 655 734
N95 (bp) 38 0 40 31
Corr NG50 (bp) 538 310 655 733
Corr NG95 (bp) 38 0 0 0
Longest contig (bp) 23,220 23,939 26,869 26,890
Coverage (%) 69.2 62.3 71.3 71.5
Misjoins 1 34 10 9
  1. The performance on the rice genome dataset, genome size: 370,733 kbp. Programs are run using default settings.