|
( k= 31 )
|
ABySS
|
Velvet
|
SOAPdenovo
|
SparseAssembler
|
|---|
|
Time (hr)
|
13
|
7
|
16
|
5
|
|
Memory peak (GB)
|
69
|
51
|
29
|
4
|
|
> 100 bp (# contigs)
|
458,456
|
397,252
|
444,545
|
386,604
|
|
Sum (kbp)
|
253,708
|
225,618
|
258,106
|
262,988
|
|
Mean size (bp)
|
553
|
568
|
581
|
680
|
|
N50 (bp)
|
538
|
310
|
655
|
734
|
|
N95 (bp)
|
38
|
0
|
40
|
31
|
|
Corr NG50 (bp)
|
538
|
310
|
655
|
733
|
|
Corr NG95 (bp)
|
38
|
0
|
0
|
0
|
|
Longest contig (bp)
|
23,220
|
23,939
|
26,869
|
26,890
|
|
Coverage (%)
|
69.2
|
62.3
|
71.3
|
71.5
|
|
Misjoins
|
1
|
34
|
10
|
9
|
- The performance on the rice genome dataset, genome size: 370,733 kbp. Programs are run using default settings.
