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Table 6 Assembly performance on the NA12878 human genome

From: Exploiting sparseness in de novo genome assembly

 

k= 31

k= 41

k= 51

Memory peak (GB)

26

29

29

> 100 bp (# k contigs )

2,740

2,800

2,744

   Sum (G bp)

2.33

2.57

2.70

Mean size (bp)

743

919

3,961

N50 (bp)

2,054

2,647

2,915

N95 (bp)

318

335

380

Longest contig (bp)

36,460

38,864

50,441

Corr NG50 (bp)*

1,502

2,213

2,610

Corr NG95 (bp)*

0

0

114

Misjoins*

21

19

17

  1. * The corrected statistics are calculated by mapping back to human chromosome 14.
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BMC Bioinformatics

ISSN: 1471-2105

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