Challenges in estimating percent inclusion of alternatively spliced junctions from RNA-seq data

BMC Bioinformatics

Table 2 Runtime

Comparison of run times between different PSI estimation methods. For our methods, we report the runtime of the shared pre-processing step separately from the PSI estimation. All tests were performed on a Dell Precision T7400 workstation with 8 cores (at 3 GHz) and 32 GB of RAM. We report wall-clock times averaged over 3 re-runs then rounded to the nearest minute (or second where appropriate).

ISSN: 1471-2105