Algorithm | Test 1 | Test 2 | Test 3 | Test 4 |
---|
HapCut - No Calls | 20.85 | 20.63 | 18.67 | 18.03 |
HapCut - Errors | 15.92 | 8.71 | 24.80 | 15.56 |
Beagle | 2.76 | 1.81 | 2.20 | 1.09 |
PPHS | 2.43 | 1.20 | 1.71 | 0.24 |
- All tests were done with 5 individuals, tests 1-3 had an expected coverage of 5 while test 4 had an expected coverage of 20. Tests 1,3 had a sequencing error rate of 5% and tests 2,4 had a sequencing error rate of 1%. The read length of tests 1,2 was 400 while for test 3,4 it was 2000 bases. The cells are the percent of Switch-Mismatch errors in the data.