Figure 3From: An improved approach for accurate and efficient calling of structural variations with low-coverage sequence dataSVseq2 uses a semi-global alignment algorithm. The gaps "GTTCTAAGCC" and "GAATCACTTGGA" are without penalty. The gap at "TAC" and "T-C" are with penalty 3. The T-A mismatch are scored -1. Other Matches are scored 1 each. Total score is 23.Back to article page