A context-based approach to identify the most likely mapping for RNA-seq experiments

BMC Bioinformatics

Table 2 Evaluation results on mouse data sets

Data set	Program	Complete Read Mapping		Junction Read Mapping
		Exact	relaxed	exact	relaxed
Mouse, 1%	TopHat	94.43	94.43	80.10	86.21
	ContextMap¹	97.03	97.05	82.95	91.62
	MapSplice	95.21	95.22	84.49	89.12
	ContextMap²	96.97	96.99	87.77	94.91
Mouse, 2%	TopHat	88.87	88.88	77.44	82.87
	ContextMap¹	95.82	95.87	80.45	88.52
	MapSplice	92.89	92.89	77.89	81.95
	ContextMap²	96.31	96.36	82.87	90.57

Accuracy of read mapping is reported for the two mouse data sets with 1% and 2% error rate, respectively. Notation is the same as in Table 1.

ISSN: 1471-2105