Skip to main content

Advertisement

Table 2 Evaluation results on mouse data sets

From: A context-based approach to identify the most likely mapping for RNA-seq experiments

Data set Program Complete Read Mapping Junction Read Mapping
   Exact relaxed exact relaxed
Mouse, 1% TopHat 94.43 94.43 80.10 86.21
  ContextMap1 97.03 97.05 82.95 91.62
  MapSplice 95.21 95.22 84.49 89.12
  ContextMap2 96.97 96.99 87.77 94.91
Mouse, 2% TopHat 88.87 88.88 77.44 82.87
  ContextMap1 95.82 95.87 80.45 88.52
  MapSplice 92.89 92.89 77.89 81.95
  ContextMap2 96.31 96.36 82.87 90.57
  1. Accuracy of read mapping is reported for the two mouse data sets with 1% and 2% error rate, respectively. Notation is the same as in Table 1.