ProDis-ContSHC: learning protein dissimilarity measures and hierarchical context coherently for protein-protein comparison in protein database retrieval

Table 1 Performance of different retrieval methods on the ASTRAL 1

Method	AUC
IR Tableau: Cosine Similarity + ProDis-ContSHC	0.973
IR Tableau: Cosine Similarity + ProDis-ContHC	0.961
IR Tableau: Cosine Similarity + CDM [30, 31]	0.954
IR Tableau: Cosine Similarity [26]	0.948
Tableau Search [56]	0.871
QP Tableau [49]	0.925
Yakusa [57]	0.950
SHEBA [58]	0.941
VAST [59, 60]	0.890
TOPS [61, 62]	0.871

AUC results for QP Tableau [49], SHEBA [58] and VAST [59, 60] are taken from [49], which used exactly the same query set and the same dataset as our experiments.

ISSN: 1471-2105