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Table 1 Characteristics of six genomic and proteomic data

From: Assessing and predicting protein interactions by combining manifold embedding with multiple information integration

Category

Feature abbreviation

Feature

Number of protein pairs

Number of proteins

Range

Data source

Genomic data

GE

Gene expression

19,653,315

6,270

[-1, 1]

[46]

 

ESS

Essentiality

667,590

1,156

{2, 1, 0}

[39]

 

SEQ

Sequence similarity

7,742

6,270

Real value-Non negative

[47]

 

TF

Transcription factor

19,397,106

6,229

Non-negative discrete, most 0

[48]

Proteomic data

DD

Domain-domain interaction

125,435

6,359

[0,1]

[49]

 

HO

Homology based PPI

177,667

6,270

Non-negative discrete, most 0, 1

[47, 50]