From: An overlapping module identification method in protein-protein interaction networks
Module | Protein | Main functions | ||
---|---|---|---|---|
 |  | BP(-log P-value) | MF(-log P-value) | CC(-log P-value) |
3 | CDC39/MOT2/NOT3/NOT5/ | nuclear-transcribed mRNA poly(A) tail shortening (21.60) | ubiquitin-protein ligase activity (10.50) | CCR4-NOT core complex (24.36) |
5 | MSH2/MLH1/MSH3/MSH6/PMS1/ | meiotic mismatch repair (31.64) | mismatched DNA binding (33.15) | mismatch repair complex (33.61) |
11 | SEN15/SEN2/SEN34/SEN54/ | tRNA-type intron splice site recognition and cleavage (29.28) | endoribonuclease activity, producing 3'-phosphomonoesters (30.03) | tRNA-intron endonuclease complex (29.00) |
12 | DIS3/RRP4/RRP42/RRP43/SKI6/ | nuclear polyadenylation-dependent mRNA catabolic process (27.68) | molecular function unknown (RRP4/RRP42/RRP43/SKI6) | cytoplasmic exosome (RNase complex (30.24) |
21 | CDC23/CDC16/APC9/APC4/APC2/APC11/APC1/APC5/CDC26/CDC27/DOC1/MND2/SWM1/ | anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process (75.04) | ubiquitin-protein ligase activity (44.07) | anaphase-promoting complex (83.63) |
25 | MRS11/TIM12/TIM22/TIM18/TIM54/TIM10/MRS5/TIM9/ | protein import into mitochondrial inner membrane (38.73) | protein transporter activity (27.42) | mitochondrial inner membrane protein insertion complex (43.22) |
26 | TOM6/TOM5/TOM40/TOM20/TOM22/TOM7/TOM70/ | protein targeting to mitochondrion (31.14) | protein channel activity (42.21) | mitochondrial outer membrane translocase complex (47.98) |
98 | YOL103w-b/PAN6/YOR142w-a/YER159c-a/YPR158w-a/ | transposition, RNA-mediated (14.06) | RNA binding (6.37) | retrotransposon nucleocapsid (13.24) |
103 | TRS85/TRS33/TRS130/TRS20/GSG1/TRS65/TRS31/TRS23/TRS120/BET3/SED5/SLY1/BOS1/BET5/DSS4/YPT1/BET1/SEC34/YKT6/YPT6/SEC22/KRE11/ | golgi vesicle transport (62.74) | rab guanyl-nucleotide exchange factor activity (35.95) | TRAPP complex (55.19) |
115 | rox3/sfl1/sin4/srb11/srb9/ | positive regulation of transcription from RNA polymerase II promoter (9.93) | transcription factor binding transcription factor activity (15.39) | mediator complex (18.12) |