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Table 3 Comparison of two representation methods for predicting human proteins interacting with HCV proteins

From: Prediction of protein-protein interactions between viruses and human by an SVM model

Test set

Our representation

Shen's representation

 

SN (%)

SP (%)

AC (%)

SN (%)

SP (%)

AC (%)

1

75.9

83.6

79.7

73.8

82.1

77.9

2

80.5

89.7

85.1

73.8

82.1

77.9

3

76.9

83.1

80

74.4

76.9

75.6

Average

77.8

85.4

81.6

74.0

80.4

77.1

  1. Comparison of our representation method with the method by Shen et al. [5] in terms of sensitivity (SN), specificity (SP) and accuracy (AC) with the HCV data. The two representation methods are different in their classification of 20 amino acids and definition of the relative frequency of an amino acid triplet (see Methods section for details).
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BMC Bioinformatics

ISSN: 1471-2105

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