Skip to main content

Table 3 Topological parameters of protein-interaction map in M. tuberculosis

From: Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs

Threshold Node Edge Diameter Characteristic path length Clustering coefficient Power law fitting
None 3465 46119 8 3.341 0.093 1.237
0.5 (PCC) 3409 35582 8 3.419 0.074 1.310
0.5 (COG) 3397 43425 8 3.445 0.099 1.220
0.5 (GOCC) 3461 45193 8 3.355 0.091 1.245
0.5 (GOMF) 3400 31045 8 3.632 0.067 1.431
0.5 (GOBP) 3373 26200 9 3.713 0.076 1.440
0.5 + 0.5 + 0.3 3383 26827 9 3.730 0.062 1.522
(GOCC + GOMF + GOBP)       
0.5 + 0.7 3324 33134 9 3.616 0.080 1.289
(PCC + COG)       
0.5 + 0.9 + 0.8 3304 29891 9 3.691 0.072 1.336
(PCC + COG + GOCC)       
0.5 + 0.7 + 0.4 3212 13244 9 4.388 0.044 1.803
(PCC + GOMF + GOBP)       
0.5 + 0.7 3281 21240 11 3.920 0.081 1.414
(COG + GOBP)