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Table 2 Lyn-Binding correct and incorrect rule formulation.

From: RuleBender: integrated modeling, simulation and visualization for rule-based intracellular biochemistry

 

Rule Text

Correct

Rec(b) + Lyn(SH 2, U) < - > Rec(b!1).Lyn(SH 2!1, U)

 

Rec(b) + Lyn(U, SH2) < - > Rec(b!1).Lyn(SH2, U!1)

Incorrect

Rec(b) + Lyn(SH 2) < - > Rec(b!1).Lyn(SH 2!1)

 

Rec(b) + Lyn(U) < - > Rec(b!1).Lyn(U!1)

  1. The bold domains are omitted in the incorrect rules.
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BMC Bioinformatics

ISSN: 1471-2105

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