Skip to main content

Table 2 Top 10 two-way gene predctor interaction results of the between-gene MDR analysis step and SNP level interaction results

From: A novel method to identify high order gene-gene interactions in genome-wide association studies: Gene-based MDR

Rank Gene combinations Number of SNPs Test BA SNP level
Interaction order Test BA
1 ERG, NEBL 4, 4 0.5833 8 0.6674
2 ERG, GABBR2 4, 4 0.5832 8 0.6558
3 CHST11, ERG 1, 4 0.5821 5 0.6004
4 CHST11, KATNAL1 1, 4 0.5820 5 0.5910
5 TIAM2, ERG 4, 4 0.5812 8 0.6585
6 COLEC12, STARD13 4, 4 0.5809 8 0.6532
7 SHANK2, MUC16 4, 4 0.5808 8 0.6536
8 KLHL29, GRIN2B 4, 4 0.5808 8 0.6483
9 CHST11, KLHL29 1, 4 0.5807 5 0.5947
10 CHST11, NIBP 1, 4 0.5805 5 0.5948