Mobilomics in Saccharomyces cerevisiaestrains

BMC Bioinformatics

Table 1 RefSeq vs either YPS128 or Y55 : CONSERVATION

Conserved regions (CONS) and putative conserved regions with unspecified bases (pCONSu) vs annotated Ty and solo-LTR in RefSeq, when pairwise compared either to strain Y55 or strain YPS128.
The pCONSu regions are classified either as telomeric or non-telomeric. Moreover, the non-telomeric regions which are conserved on RefSeq are divided in three classes, depending on their position w.r.t. annotated MGE on RefSeq: pCONSu which are labelled as “IN-mobil” correspond to annotated MGE on RefSeq; pCONSu which are labelled as “prox-mobil” are out of annotated MGE but within a distance of ±200b from annotated Ty or solo-LTR; pCONSu which are more distant are labelled as “OUT-mobil”.

ISSN: 1471-2105